Applications/Qiime2 - Revision history

Pysdlb: /* Batch Job */

2022-11-17T13:08:20Z

‎Batch Job

Pysdlb: /* Batch Job */

2022-11-17T11:34:33Z

‎Batch Job

Pysdlb: /* Batch Job */

2022-11-17T11:33:47Z

‎Batch Job

Pysdlb: /* Usage Examples */

2022-11-17T11:33:16Z

‎Usage Examples

Pysdlb: /* Further Information */

2022-11-16T10:56:09Z

‎Further Information

Pysdlb: /* Navigation */

2022-11-16T10:56:00Z

‎Navigation

Pysdlb at 13:35, 24 May 2019

2019-05-24T13:35:52Z

Chris.collins: /* Application Details */

2019-01-24T09:47:03Z

‎Application Details

Chris.collins: Created page with "TOC ==Application Details== * Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed..."

2019-01-24T09:46:50Z

Created page with "__TOC__ ==Application Details== * Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed..."

New page

__TOC__

==Application Details==

* Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed.
* Version: 2018-11
* Modules: qiime2/qiime2-2018.11
* Licence: Open source (Github)

==Usage Examples==

Usage information can be found at [https://docs.qiime2.org/2018.11/ https://docs.qiime2.org/2018.11/]

<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;">

[username@login01 ~]$ module add qiime2/qiime2-2018.11

</pre>

==Further Information==

* [https://qiime2.org/ https://qiime2.org/]
* [https://docs.qiime2.org/2018.11/ https://docs.qiime2.org/2018.11/]

{|
|style="width:5%; border-width: 0" | [[File:icon_home.png]]
|style="width:95%; border-width: 0" |
* [[Main_Page|Home]]
* [[Applications|Application support]]
* [[General|General]]
* [[Training|Training]]
* [[Programming|Programming support]]
|-
|}

@@ Line 35: / Line 35: @@
 ##For script: write your script then make it executable with:  chmod +x qiime.sh
 ./qiime.sh
 </pre>
 ==Further Information==

@@ Line 19: / Line 19: @@
 ===Batch Job===
 <pre>
 #!/bin/bash

@@ Line 32: / Line 32: @@
 ## Run your program or script
-##For script: write your script then make it executable with ''chmod +x qiime.sh''
+##For script: write your script then make it executable with:  chmod +x qiime.sh
 ./qiime.sh

← Older revision		Revision as of 11:33, 17 November 2022
Line 15:		Line 15:

	[username@login01 ~]$ module add qiime2/qiime2-2018.11		[username@login01 ~]$ module add qiime2/qiime2-2018.11
		+
		+	</pre>
		+
		+	===Batch Job===
		+	<pre>
		+	#!/bin/bash
		+	#SBATCH -J qiime2job
		+	#SBATCH n 4
		+	#SBATCH --mem=5G
		+	#SBATCH -o %N.%j.%a.out
		+	#SBATCH -e %N.%j.%a.err
		+	#SBATCH -p compute
		+
		+	module purge
		+	module load qiime2/qiime2-018.11
		+
		+	## Run your program or script
		+	##For script: write your script then make it executable with ''chmod +x qiime.sh''
		+	./qiime.sh

	</pre>		</pre>

← Older revision		Revision as of 10:56, 16 November 2022
Line 24:		Line 24:


−	~~==Navigation==~~	+	{{Modulepagenav}}
−
−	* [[Main_Page\|Home]]
−	~~* [[Applications\|Application support]] *~~
−	* [[General\|General]]
−	* [[Programming\|Programming support]]

@@ Line 22: / Line 22: @@
 * [https://qiime2.org/ https://qiime2.org/]
 * [https://docs.qiime2.org/2018.11/ https://docs.qiime2.org/2018.11/]
 {{Modulepagenav}}

@@ Line 23: / Line 23: @@
 * [https://docs.qiime2.org/2018.11/ https://docs.qiime2.org/2018.11/]
-{|
-|style="width:5%; border-width: 0" | [[File:icon_home.png]]
+==Navigation==
-|style="width:95%; border-width: 0" |
 * [[Main_Page|Home]]
-* [[Applications|Application support]]
+* [[Applications|Application support]] *
 * [[General|General]]
 * [[Programming|Programming support]]

@@ Line 6: / Line 6: @@
 * Version: 2018-11
 * Modules: qiime2/qiime2-2018.11
-* Licence: Open source (Github)
+* Licence: Open source
 ==Usage Examples==

Applications/Qiime2 - Revision history

Pysdlb: /* Batch Job */

Pysdlb: /* Batch Job */

Pysdlb: /* Batch Job */

Pysdlb: /* Usage Examples */

Pysdlb: /* Further Information */

Pysdlb: /* Navigation */

Pysdlb at 13:35, 24 May 2019

Chris.collins: /* Application Details */

Chris.collins: Created page with "__TOC__ ==Application Details== * Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed..."

Chris.collins: Created page with "TOC ==Application Details== * Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed..."