Difference between revisions of "Applications/Mpich"
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==Application Details== | ==Application Details== | ||
* Description: MPICH is a freely available, portable implementation of MPI, the Standard for message-passing libraries. It implements all versions of the MPI standard including MPI-1, MPI-2, MPI-2.1, MPI-2.2, and MPI-3. | * Description: MPICH is a freely available, portable implementation of MPI, the Standard for message-passing libraries. It implements all versions of the MPI standard including MPI-1, MPI-2, MPI-2.1, MPI-2.2, and MPI-3. | ||
| − | * Version: 3.2 (compiled with gcc) | + | * Version: 3.2 (compiled with gcc or intel) |
| − | * Modules: mpich/3.2/gcc-5.2.0 | + | * Modules: mpich/3.2/gcc-5.2.0 and mpich/intel/3.2.0 |
* Licence: Open source under Github | * Licence: Open source under Github | ||
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<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | <pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | ||
| − | [username@c001 ~]$ module mpich/3.2/gcc-5.2.0 | + | [username@c001 ~]$ module add mpich/3.2/gcc-5.2.0 |
[username@c001 ~]$ mpiexec -n 28 mpiTEST | [username@c001 ~]$ mpiexec -n 28 mpiTEST | ||
</pre> | </pre> | ||
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<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | <pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | ||
| − | [username@c001 ~]$ module mpich/3.2/gcc-5.2.0 | + | [username@c001 ~]$ module add mpich/3.2/gcc-5.2.0 |
[username@c001 ~]$ mpiexec -f machinefile -n 28 mpiTEST | [username@c001 ~]$ mpiexec -f machinefile -n 28 mpiTEST | ||
</pre> | </pre> | ||
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c004:1 | c004:1 | ||
</pre> | </pre> | ||
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| + | * The ':2', ':4', ':1' segments depict the number of processes you want to run on each node. | ||
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This runs on the scheduler SLURM | This runs on the scheduler SLURM | ||
| − | <pre style="background-color: | + | <pre style="background-color: #f5f5dc; color: black; font-family: monospace, sans-serif;"> |
#!/bin/bash | #!/bin/bash | ||
#SBATCH -J MPI-testXX | #SBATCH -J MPI-testXX | ||
| − | #SBATCH -N | + | #SBATCH -N 1 |
| − | #SBATCH --ntasks-per-node | + | #SBATCH --ntasks-per-node 4 |
| − | #SBATCH -D /home/user1/CODE_SAMPLES/ | + | #SBATCH -D /home/user1/CODE_SAMPLES/MPICH |
#SBATCH -o %N.%j.%a.out | #SBATCH -o %N.%j.%a.out | ||
#SBATCH -e %N.%j.%a.err | #SBATCH -e %N.%j.%a.err | ||
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module purge | module purge | ||
| − | module | + | module add gcc/4.9.3 |
| − | module | + | module add mpich/3.2/gcc-5.2.0 |
export I_MPI_DEBUG=5 | export I_MPI_DEBUG=5 | ||
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export I_MPI_FALLBACK=no | export I_MPI_FALLBACK=no | ||
| − | + | srun -n4 --mpi=pmi2 /home/user1/CODE_SAMPLES/OPENMPI/scatteravg 100 | |
</pre> | </pre> | ||
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==Further Information== | ==Further Information== | ||
| − | * [ | + | * [http://www.mpich.org/ http://www.mpich.org/] |
* [https://en.wikipedia.org/wiki/Message_Passing_Interface https://en.wikipedia.org/wiki/Message_Passing_Interface] | * [https://en.wikipedia.org/wiki/Message_Passing_Interface https://en.wikipedia.org/wiki/Message_Passing_Interface] | ||
| − | * [https:// | + | * [https://slurm.schedmd.com/mpi_guide.html https://slurm.schedmd.com/mpi_guide.html] |
| − | { | + | {{Modulepagenav}} |
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Latest revision as of 10:51, 16 November 2022
Contents
Application Details
- Description: MPICH is a freely available, portable implementation of MPI, the Standard for message-passing libraries. It implements all versions of the MPI standard including MPI-1, MPI-2, MPI-2.1, MPI-2.2, and MPI-3.
- Version: 3.2 (compiled with gcc or intel)
- Modules: mpich/3.2/gcc-5.2.0 and mpich/intel/3.2.0
- Licence: Open source under Github
Usage Examples
Message Passing Interface (MPI) is a standardized and portable message-passing system designed by a group of researchers from academia and industry to function on a wide variety of parallel computing architectures. The standard defines the syntax and semantics of a core of library routines useful to a wide range of users writing portable message-passing programs in C, C++, and Fortran.
Interactive Mode
The MPI Standard describes mpiexec as a suggested way to run MPI programs. MPICH implements the mpiexec standard, and also provides some extensions. This example runs on a reserved node (eg. c001)
[username@c001 ~]$ module add mpich/3.2/gcc-5.2.0 [username@c001 ~]$ mpiexec -n 28 mpiTEST
This can be run with a host file, the file here is called machinefile:
[username@c001 ~]$ module add mpich/3.2/gcc-5.2.0 [username@c001 ~]$ mpiexec -f machinefile -n 28 mpiTEST
The 'machinefile' is of the form:
c001 c002:2 c003:4 c004:1
- The ':2', ':4', ':1' segments depict the number of processes you want to run on each node.
Non interactive job
This runs on the scheduler SLURM
#!/bin/bash #SBATCH -J MPI-testXX #SBATCH -N 1 #SBATCH --ntasks-per-node 4 #SBATCH -D /home/user1/CODE_SAMPLES/MPICH #SBATCH -o %N.%j.%a.out #SBATCH -e %N.%j.%a.err #SBATCH -p compute #SBATCH --exclusive echo $SLURM_JOB_NODELIST module purge module add gcc/4.9.3 module add mpich/3.2/gcc-5.2.0 export I_MPI_DEBUG=5 export I_MPI_FABRICS=shm:tmi export I_MPI_FALLBACK=no srun -n4 --mpi=pmi2 /home/user1/CODE_SAMPLES/OPENMPI/scatteravg 100
And passing it to SLURM
[username@login01 ~]$ sbatch mpidemo.job Submitted batch job 889552