Difference between revisions of "Applications/Qiime2"
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===Batch Job=== | ===Batch Job=== | ||
| + | <!--From: https://wiki.orc.gmu.edu/mkdocs/qiime2_on_argo_tutorial/ --> | ||
<pre> | <pre> | ||
#!/bin/bash | #!/bin/bash | ||
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##For script: write your script then make it executable with: chmod +x qiime.sh | ##For script: write your script then make it executable with: chmod +x qiime.sh | ||
./qiime.sh | ./qiime.sh | ||
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</pre> | </pre> | ||
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| + | See [[FurtherTopics/Command_Line_File_Permissions #Changing access rights | File Permissions]] for more info on chmod. | ||
==Further Information== | ==Further Information== | ||
Latest revision as of 13:08, 17 November 2022
Application Details
- Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed.
- Version: 2018-11
- Modules: qiime2/qiime2-2018.11
- Licence: Open source
Usage Examples
Usage information can be found at https://docs.qiime2.org/2018.11/
[username@login01 ~]$ module add qiime2/qiime2-2018.11
Batch Job
#!/bin/bash #SBATCH -J qiime2job #SBATCH n 4 #SBATCH --mem=5G #SBATCH -o %N.%j.%a.out #SBATCH -e %N.%j.%a.err #SBATCH -p compute module purge module load qiime2/qiime2-018.11 ## Run your program or script ##For script: write your script then make it executable with: chmod +x qiime.sh ./qiime.sh
See File Permissions for more info on chmod.