Applications/Samtools
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Application Details
- Description: The OBITools package is a set of programs specifically designed for analysing NGS data in a DNA meta-barcoding context, taking into account taxonomic information
- Version: 1.3.1.
- Module: module samtools/gcc/1.3.1.
- Licence: BSD License, MIT License
Usage Areas
Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories:
- Samtools - Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format
- BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
- HTSlib - A C library for reading/writing high-throughput sequencing data
Module
[username@login01 ~]$ module samtools/gcc/1.3.1.
Slurm Example