Applications/Prinseq-lite

Application Details

• Description: PRINSEQ can be used to filter, reformat, or trim genomic and metagenomic sequence data.
• Version: 0.20.4
• Modules: prinseq-lite/0.20.4
• Citing: If you use PRINSEQ, please cite: Schmieder R and Edwards R: Quality control and preprocessing of metagenomic datasets. Bioinformatics 2011, 27:863-864. [PMID: 21278185]

Usage Examples

Usage information can be found at http://prinseq.sourceforge.net/manual.html

Interactive Session

[username@login01 ~]$ interactive
salloc: Granted job allocation 3619683
Job ID 3619683 connecting to c025, please wait...
c025.vc-main

[username@login01 ~]$ module add prinseq-lite/0.20.4

Next Steps

• http://prinseq.sourceforge.net/index.html

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