Applications/Qiime2

Application Details

• Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed.
• Version: 2018-11
• Modules: qiime2/qiime2-2018.11
• Licence: Open source

Usage Examples

Usage information can be found at https://docs.qiime2.org/2018.11/

[username@login01 ~]$ module add qiime2/qiime2-2018.11

Batch Job

#!/bin/bash
#SBATCH -J qiime2job
#SBATCH n 4
#SBATCH --mem=5G
#SBATCH -o %N.%j.%a.out
#SBATCH -e %N.%j.%a.err
#SBATCH -p compute

module purge 
module load qiime2/qiime2-018.11

## Run your program or script
##For script: write your script then make it executable with:  chmod +x qiime.sh
./qiime.sh 

See File Permissions for more info on chmod.

Further Information

• https://qiime2.org/
• https://docs.qiime2.org/2018.11/

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