Difference between revisions of "Applications/Prinseq-lite"
From HPC
m (→Further Information) |
m (→Usage Examples) |
||
| Line 10: | Line 10: | ||
==Usage Examples== | ==Usage Examples== | ||
Usage information can be found at [http://prinseq.sourceforge.net/manual.html http://prinseq.sourceforge.net/manual.html] | Usage information can be found at [http://prinseq.sourceforge.net/manual.html http://prinseq.sourceforge.net/manual.html] | ||
| + | |||
| + | ===Interactive Session=== | ||
<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | <pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | ||
| + | |||
| + | [username@login01 ~]$ interactive | ||
| + | salloc: Granted job allocation 3619683 | ||
| + | Job ID 3619683 connecting to c025, please wait... | ||
| + | c025.vc-main | ||
[username@login01 ~]$ module add prinseq-lite/0.20.4 | [username@login01 ~]$ module add prinseq-lite/0.20.4 | ||
Revision as of 16:33, 16 November 2022
Application Details
- Description: PRINSEQ can be used to filter, reformat, or trim genomic and metagenomic sequence data.
- Version: 0.20.4
- Modules: prinseq-lite/0.20.4
- Citing: If you use PRINSEQ, please cite: Schmieder R and Edwards R: Quality control and preprocessing of metagenomic datasets. Bioinformatics 2011, 27:863-864. [PMID: 21278185]
Usage Examples
Usage information can be found at http://prinseq.sourceforge.net/manual.html
Interactive Session
[username@login01 ~]$ interactive salloc: Granted job allocation 3619683 Job ID 3619683 connecting to c025, please wait... c025.vc-main [username@login01 ~]$ module add prinseq-lite/0.20.4