Difference between revisions of "Applications/Qiime2"

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===Batch Job===
 
===Batch Job===
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<!--From: https://wiki.orc.gmu.edu/mkdocs/qiime2_on_argo_tutorial/  -->
 
<pre>
 
<pre>
 
#!/bin/bash
 
#!/bin/bash
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##For script: write your script then make it executable with:  chmod +x qiime.sh
 
##For script: write your script then make it executable with:  chmod +x qiime.sh
 
./qiime.sh  
 
./qiime.sh  
 
 
</pre>
 
</pre>
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See [[FurtherTopics/Command_Line_File_Permissions #Changing access rights | File Permissions]] for more info on chmod.
  
 
==Further Information==
 
==Further Information==

Latest revision as of 13:08, 17 November 2022

Application Details

  • Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed.
  • Version: 2018-11
  • Modules: qiime2/qiime2-2018.11
  • Licence: Open source

Usage Examples

Usage information can be found at https://docs.qiime2.org/2018.11/


[username@login01 ~]$ module add qiime2/qiime2-2018.11

Batch Job

#!/bin/bash
#SBATCH -J qiime2job
#SBATCH n 4
#SBATCH --mem=5G
#SBATCH -o %N.%j.%a.out
#SBATCH -e %N.%j.%a.err
#SBATCH -p compute

module purge 
module load qiime2/qiime2-018.11

## Run your program or script
##For script: write your script then make it executable with:  chmod +x qiime.sh
./qiime.sh 

See File Permissions for more info on chmod.

Further Information





Modules | Main Page | Further Topics