Applications/Discovardenovo - Revision history

Pysdlb at 11:21, 24 May 2019

2019-05-24T11:21:56Z

Pysdlb at 14:13, 7 June 2018

2018-06-07T14:13:27Z

Pysdlb at 09:48, 12 April 2017

2017-04-12T09:48:20Z

Pysdlb: Pysdlb moved page Discovardenovo to Applications/Discovardenovo without leaving a redirect

2017-04-12T09:28:16Z

Pysdlb moved page Discovardenovo to Applications/Discovardenovo without leaving a redirect

Pysdlb: Created page with "TOC ==Application Details== * Description: DISCOVAR de novo can generate de novo assemblies for both large and small genomes. * Version: 52488 * Modules: discovardenovo/..."

2017-04-12T09:27:31Z

Created page with "__TOC__ ==Application Details== * Description: DISCOVAR de novo can generate de novo assemblies for both large and small genomes. * Version: 52488 * Modules: discovardenovo/..."

New page

__TOC__

==Application Details==

* Description: DISCOVAR de novo can generate de novo assemblies for both large and small genomes.
* Version: 52488
* Modules: discovardenovo/52488
* Licence: Open source, with (c) 2014 Broad Institute

==Usage Examples==

DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping costs low. Currently it takes as input Illumina reads of length 250 or longer — produced on MiSeq or HiSeq 2500 — and from a single PCR-free library. These data enable a level of completeness and continuity that was not previously possible.

DISCOVAR can call variants on a region by region basis, potentially tiling an entire large genome. DISCOVAR variant calling is under active development and transitioning to VCF.

DISCOVAR de novo can generate de novo assemblies for both large and small genomes. It currently does not call variants.

<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;">

[username@login01 ~]$ module load discovardenovo/52488

</pre>

==Further Information==

* [https://software.broadinstitute.org/software/discovar/blog/ https://software.broadinstitute.org/software/discovar/blog/l]

{|
|style="width:5%; border-width: 0" | [[File:icon_home.png]]
|style="width:95%; border-width: 0" |
* [[Main_Page|Home]]
* [[Applications|Application support]]
* [[General|General]]
* [[Training|Training]]
* [[Programming|Programming support]]
|-
|}

← Older revision		Revision as of 09:48, 12 April 2017
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	==Further Information==		==Further Information==

−	* [https://software.broadinstitute.org/software/discovar/blog/ https://software.broadinstitute.org/software/discovar/blog/l]	+	* [https://software.broadinstitute.org/software/discovar/blog/ https://software.broadinstitute.org/software/discovar/blog/]

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-{|
+==Navigation==
-|style="width:5%; border-width: 0" | [[File:icon_home.png]]
 * [[Main_Page|Home]]
-* [[Applications|Application support]]
+* [[Applications|Application support]] *
 * [[General|General]]
 * [[Programming|Programming support]]

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 <pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;">
-[username@login01 ~]$ module load discovardenovo/52488
+[username@login01 ~]$ module add discovardenovo/52488
 </pre>