Applications/Samtools - Revision history

Pysdlb: /* Navigation */

2022-11-16T10:58:16Z

‎Navigation

2019-05-24T13:43:19Z

2017-04-06T08:32:58Z

2017-04-05T16:18:55Z

2017-04-05T16:18:26Z

2017-04-05T15:34:21Z

2017-04-05T15:34:03Z

2017-04-05T10:28:58Z

2017-03-24T11:58:45Z

Pysdlb moved page Samtools to Applications/Samtools without leaving a redirect

2017-03-24T11:58:13Z

← Older revision		Revision as of 10:58, 16 November 2022
Line 96:		Line 96:
	* [http://www.htslib.org/ http://www.htslib.org/]		* [http://www.htslib.org/ http://www.htslib.org/]

−	~~==Navigation==~~	+	{{Modulepagenav}}
−
−	* [[Main_Page\|Home]]
−	~~* [[Applications\|Application support]] *~~
−	* [[General\|General]]
−	* [[Programming\|Programming support]]

@@ Line 96: / Line 96: @@
 * [http://www.htslib.org/ http://www.htslib.org/]
-{|
+==Navigation==
-|style="width:5%; border-width: 0" | [[File:icon_home.png]]
 * [[Main_Page|Home]]
-* [[Applications|Application support]]
+* [[Applications|Application support]] *
 * [[General|General]]
 * [[Programming|Programming support]]

@@ Line 18: / Line 18: @@
 With linkages to the following modules too:
 * [[applications/Cufflinks|Cufflinks]]
 * [[applications/Tophat|Tophat]]
-* Bowtie1

@@ Line 85: / Line 85: @@
 <pre style="background-color: #000000; color: white; border: 2px solid black; font-family: monospace, sans-serif;">
-[username@login01 ~]$ module samtools/gcc/1.3.1.
+[username@login01 ~]$ module samtools/gcc/1.3.1
 </pre>

← Older revision		Revision as of 16:18, 5 April 2017
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	* [[applications/Cufflinks\|Cufflinks]]		* [[applications/Cufflinks\|Cufflinks]]
−	* Tophat	+	* [[applications/Tophat\|Tophat]]
		+	* Bowtie1
		+	* Bowtie2

@@ Line 14: / Line 14: @@
 * '''BCFtools''' - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
 * '''HTSlib''' - A C library for reading/writing high-throughput sequencing data
 With linkages to the following modules too:

← Older revision		Revision as of 15:34, 5 April 2017
Line 14:		Line 14:
	* '''BCFtools''' - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants		* '''BCFtools''' - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
	* '''HTSlib''' - A C library for reading/writing high-throughput sequencing data		* '''HTSlib''' - A C library for reading/writing high-throughput sequencing data
		+
		+	With linkages to the following modules too:
		+
		+	* [[applications/Cufflinks\|Cufflinks]]
		+	* Tophat
		+

← Older revision		Revision as of 10:28, 5 April 2017
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	==Further Information==		==Further Information==

−	[http://www.htslib.org/ http://www.htslib.org/]	+	* [http://www.htslib.org/ http://www.htslib.org/]
		+
		+	{\|
		+	\|style="width:5%; border-width: 0" \| [[File:icon_home.png]]
		+	\|style="width:95%; border-width: 0" \|
		+	* [[Main_Page\|Home]]
		+	* [[Applications\|Application support]]
		+	* [[General\|General]]
		+	* [[Training\|Training]]
		+	* [[Programming\|Programming support]]
		+	\|-
		+	\|}

← Older revision	Revision as of 11:58, 24 March 2017
(No difference)

@@ Line 4: / Line 4: @@
 *Module: module samtools/gcc/1.3.1.
 *Licence: BSD License, MIT License
 ==Usage Areas==