Applications/HyPhy

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Application Details

  • Description: HyPhy (Hypothesis Testing using Phylogenies) is an open-source software package for the analysis of genetic sequences (in particular the inference of natural selection) using techniques in phylogenetics, molecular evolution, and machine learning
  • Version: 2.2.7
  • Module: hyphy/2.2.7/gcc-6.3.0/openmpi-2.0.2
  • Licence: Open source

Usage Examples

Currently its available only after through interactive session. its not possible to run it on login nodes of Viper

Module

[username@c001 ~]$ module add hyphy/2.2.7/gcc-6.3.0/openmpi-2.0.2

or

[username@c001 ~]$ module add hyphy/2.2.7/gcc-6.3.0/openmpi-2.0.2

Description

There are two binaries available.

  • HYPHYMP is openMP implementation that could utilise more than 1 processors.
  • HYPHYMPI is MPI implementation that could run on single or multiple nodes.