- Description: TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
- Version: 2.1.1 (compiled with gcc)
- Module: module tophat/gcc/2.1.1
- Licence: open source and freely available under the Artistic license
Tophat has the following commands available:
With linkages to the following modules too:
[username@login01 ~]$ module add tophat/gcc/2.1.1