Revision as of 13:20, 7 June 2018

Application Details

• Description : Utilities is a collection, including zip, unzip, bzip2, bunzip2, git, and wget
• Versions : Various
• Module names : utilities/multi
• License: GNU license(s)

Usage Examples

The following utilities are loaded as part of this module:

• bzip2 (& bunzip2)
• git
• zip (& unzip)
• wget

Special Consideration

• There is an issue with with using https:// addresses with git, this is easily resolved with replacing the operator git:// rather than https://

[root@c025 ~]# module add utilities/multi
[root@c025 ~]# git clone git://github.com/Tomas-M/linux-live
Cloning into 'linux-live'...
warning: templates not found /usr/share/git-core/templates
remote: Counting objects: 2945, done.
remote: Compressing objects: 100% (267/267), done.
remote: Total 2945 (delta 171), reused 362 (delta 124), pack-reused 2519
Receiving objects: 100% (2945/2945), 5.82 MiB | 5.77 MiB/s, done.
Resolving deltas: 100% (1304/1304), done.

Batch Submission

#!/bin/bash

#SBATCH -J -20
#SBATCH -N 1
#SBATCH --ntasks-per-node=20

#SBATCH -o test.out
#SBATCH -e test.err
#SBATCH -p compute
#SBATCH --exclusive
#SBATCH --time=2-00:00:00

echo $SLURM_NTASKS
echo $SLURM_JOB_NODELIST
echo $SLURM_HOSTS

module purge
module add utilities/multi

wget http://www.example.com/somedatatodownload.zip
unzip somedatatodownload.zip
/home/user/processthisdata mydatadownloaded

[username@login01 ~]$ sbatch downloadprocess.job
Submitted batch job 389511

Further information

• http://www.gnu.org/

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