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| − | === Welcome to Viper Wiki ===
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| − | [[File:rot-dn.gif|frame|left]] <br/>
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| − | <strong>This area provides technical support to the users of Viper</strong>.
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| − | == Application Support ==
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| − | Click on the links below for support on the individual packages below:
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| − | | style="width:25%" | <Strong>Package</Strong> | + | | style="width:25%; background: #ecc;" | <Strong>Welcome to Viper Wiki </Strong> |
| − | | style="width:75%" | <Strong>Description</Strong> | + | | style="width:75%; background: #ecc;" | |
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| − | | [[applications/Ansys|Ansys]]
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| − | | ANSYS Fluent software includes broad physical modelling capabilities to model flow, turbulence, heat transfer, and reactions for industrial applications.
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| − | | [[applications/Avizo|Avizo]]
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| − | | Avizo data visualisation and analysis tool
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| − | | [[applications/Autotools|Autotools]]
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| − | | GNU Autotools, a suite of programming tools designed to assist in making source code packages
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| − | | [[applications/COMSOL|COMSOL]]
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| − | | COMSOL Multiphysics is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems
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| − | | [[applications/CP2K|CP2K]]
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| − | | CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems.
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| − | | [[applications/Delft3D|Delft3D]]
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| − | | Delft3D is a world leading 3D modeling suite to investigate hydrodynamics, sediment transport and morphology and water quality for fluvial, estuarine and coastal environments.
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| − | | [[applications/FDS-SMV|FDS-SMV]]
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| − | | Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. Smokeview (SMV) is a visualization program used to display the output of FDS and CFAST simulations.
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| − | | [[applications/GCC|GCC]]
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| − | | GCC (GNU Compiler Collection) is a collection of compilers consisting of C, C++, Fortran and more.
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| − | | [[applications/Gnuplot|GNUplot]]
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| − | | Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms.
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| − | |[[applications/IDL|IDL]]
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| − | | IDL, short for Interactive Data Language, is a programming language used for data analysis. It is popular in particular areas of science, such as astronomy, atmospheric physics and medical imaging.
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| − | |[[applications/LS-DYNA|LS-DYNA]]
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| − | | General-purpose finite element program capable of simulating complex real world problems.
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| − | | [[Applications/Matlab|Matlab]]
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| − | | Numerical Computing Environment.
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| − | | [[Applications/MrBayes|MrBayes]]
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| − | | MrBayes: Bayesian Inference of Phylogeny
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| − | | [[applications/Nwchem|Nwchem]]
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| − | | NWChem provides computational chemistry tools and particularly large scientific computational chemistry problems.
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| − | |[[applications/Orca|Orca]]
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| − | | ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules.
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| − | |[[applications/Perl|Perl]]
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| − | | Perl is a family of high-level, general-purpose, interpreted, dynamic programming languages.
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| − | | [[applications/SAS|SAS]]
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| − | | Statistical Analysis System.
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| − | | [[applications/Star-ccm+|Star-ccm+]]
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| − | | Computational Fluid Package.
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| − | | [[applications/Stata|Stata]]
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| − | | Stata is a commercial statistical package, which provides a complete solution for data analysis, data management, and graphics.
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| − | | [[applications/Utilities|Utilities]] | + | | [[File:newbanner.png|link=http://hpc.mediawiki.hull.ac.uk/General/What_is_Viper]] |
| − | | General utilities module including zip, wget and git utilities. | + | | <strong>This area provides technical support to the users of Viper</strong> |
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| − | == General Support ==
| + | * [[Applications|Applications]] installed on ''Viper''. |
| − | | + | * [[Libraries|Libraries]] used with other programs. |
| − | Click on the links below for general support:
| + | * [[Programming|Development]] to program your own codes, and run third-party code. |
| − | | + | * [[General|General]] items, like connecting to ''Viper'', VPN and training materials. |
| − | {| class="wikitable"
| + | <!--* [[ViperUpdate|Viper Update]] Information about the Viper updates.--> |
| − | | style="width:25%" | <Strong>Topic</Strong>
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| − | | style="width:75%" | <Strong>Description</Strong>
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| − | | [[General/What_is_Viper|What is Viper]]
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| − | | What is Viper?
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| − | | [[General/Batch|Batch Jobs]]
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| − | | Viper batch jobs guide
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| − | | [[General/Interactive|Interactive Sessions]]
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| − | | Viper Interactive session guide
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| − | | [[General/Modules|Modules]]
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| − | | Application module guide
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| − | | [[General/Slurm|Slurm]]
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| − | | Slurm how-to
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| − | | [[General/Visualisation Nodes|Visualisation Nodes]]
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| − | | Guide to using Viper's visualisation nodes
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| − | == Training ==
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| − | | style="width:25%" | <Strong>Training Area</Strong> | + | | style="width:25%; background: #bbd;" | <Strong>Other Areas </Strong> |
| − | | style="width:75%" | <Strong>Description</Strong> | + | | style="width:75%; background: #bbd;" | |
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| − | | [[Training/Getting Connected|Getting Connected]]
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| − | | Learn how to connect to Viper
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| + | * [http://hpc.mediawiki.hull.ac.uk/General/What_is_Viper Learn more about Viper?] |
| − | | [[Training/Transferring Data|Transferring Data]]
| + | * [https://viper.hull.ac.uk/ Apply for an account (''campus only'')] |
| − | | Learn how to download and upload data.
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| − | | [[Training/Working Remotely on Viper|Working Remotely on Viper]]
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| − | | Learn how to remotely connect to Viper.
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| − | | [[Training/Linux - command line|Linux command line]] | |
| − | | Learn the Linux command line with this extensive guide.
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| − | | [[Training/Linux_-_vi_editor|Linux vi editor]]
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| − | | Learn the Linux editor vi for editing files
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| − | | [[Training/Linux - Nano editor|Linux nano editor]]
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| − | | Learn the Linux editor nano for editing files
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| − | | [[Training/Data_Backup|Data Backup]]
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| − | | Data backup for user accounts
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| − | |}
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| − | == Programming Support ==
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| − | Click on the links below for support on programming packages:
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| − | {| class="wikitable"
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| − | | style="width:25%" | <Strong>Package</Strong>
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| − | | style="width:75%" | <Strong>Description</Strong>
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| − | | [[programming/C|C]]
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| − | | C is a general-purpose, high-level language that was originally developed by Dennis M. Ritchie to develop the UNIX operating system at Bell Labs.
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| − | | [[programming/C-Plusplus|C++]]
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| − | | C++ is a general-purpose programming language. It has imperative, object-oriented and generic programming features, while also providing facilities for low-level memory manipulation.
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| − | | [[programming/C-Sharp|C-Sharp]]
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| − | | C# is a multi-paradigm programming language encompassing strong typing, imperative, declarative, functional, generic, object-oriented (class-based), and component-oriented programming. Originally created by Microsoft.
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| − | | [[programming/Cuda|CUDA]]
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| − | | CUDA is a parallel computing platform and application programming interface (API) model created by Nvidia.
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| − | | [[programming/Fortran|Fortran]]
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| − | | Fortran is a general-purpose, imperative programming language that is especially suited to numeric computation and scientific computing.
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| − | | [[programming/Java|JAVA]]
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| − | | Java is a high-level programming language originally developed by Sun Microsystems and released in 1995.
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| − | | [[programming/OpenMP|OpenMP]]
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| − | | OpenMP is an implementation of multithreading, a method of parallelizing whereby a master thread (a series of instructions executed consecutively) forks a specified number of slave threads and the system divides a task among them.
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| − | | [[programming/OpenMPI|OpenMPI]]
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| − | | MPI stands for the Message Passing Interface. MPI is a standardized API typically used for parallel and/or distributed computing.
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| − | | [[programming/Perl|Perl]]
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| − | | Perl is an interpreted language useful for rapid code development and multi-purpose programming.
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| − | | [[programming/Python|Python]]
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| − | | Python is an interpreted language useful for rapid code development and distributed computing.
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| − | |[[programming/R|R]]
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| − | | R is a programming language and software environment for statistical analysis, graphics representation and reporting.
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