Difference between revisions of "Applications/repast-hpc"
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==Usage== | ==Usage== | ||
| − | + | It implements the core Repast Simphony concepts (e.g. contexts and projections), modifying them to work in a parallel distributed environment. | |
Repast HPC is written in cross-platform C++. | Repast HPC is written in cross-platform C++. | ||
| + | ===Example=== | ||
| + | |||
| + | ====Interactive Session==== | ||
| + | |||
| + | Below is an example of using repast-hpc on Viper | ||
| + | |||
| + | <pre style="background-color: #000000; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | ||
| + | |||
| + | [pysdlb@login01 ~]$ interactive | ||
| + | salloc: Granted job allocation 520259 | ||
| + | Job ID 520259 connecting to c019, please wait... | ||
| + | [username@c019 ~]$ module add repast-hpc/gcc/2.2.0 | ||
| + | [username@c019 ~]$ module add boost/gcc/1.53.0 | ||
| + | [username@c019 ~]$ module add openmpi/gcc/1.10.5 | ||
| + | [username@c019 ~]$ cd repast_hpc/bin | ||
| + | [username@c019 rumor]$ ./rumor_model | ||
| + | usage: X -config string -properties string | ||
| + | config string: string is the path to the repast exascale | ||
| + | configuration properties file | ||
| + | properties string: string is the path to the model properties file | ||
| + | |||
| + | </pre> | ||
| + | |||
| + | |||
| + | ====Non interactive job==== | ||
| + | |||
| + | This runs on the scheduler SLURM | ||
| + | |||
| + | <pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | ||
| + | |||
| + | #!/bin/bash | ||
| + | #SBATCH -J MPI-repast-hpc | ||
| + | #SBATCH -N 4 | ||
| + | #SBATCH --ntasks-per-node 1 | ||
| + | #SBATCH -D /home/user/CODE_SAMPLES/Repast-HPC | ||
| + | #SBATCH -o %N.%j.%a.out | ||
| + | #SBATCH -e %N.%j.%a.err | ||
| + | #SBATCH -p compute | ||
| + | #SBATCH --exclusive | ||
| + | |||
| + | echo $SLURM_JOB_NODELIST | ||
| + | |||
| + | module purge | ||
| + | module add repast-hpc/gcc/2.2.0 | ||
| + | module add boost/gcc/1.53.0 | ||
| + | module add openmpi/gcc/1.10.5 | ||
| + | export I_MPI_DEBUG=5 | ||
| + | export I_MPI_FABRICS=shm:tmi | ||
| + | export I_MPI_FALLBACK=no | ||
| − | + | mpirun -n 4 ./zombie_model1 zombie1_config.props zombie1_model.props | |
| − | |||
| − | |||
</pre> | </pre> | ||
Latest revision as of 14:12, 19 October 2017
Contents
Application Details
- Description: Repast for HPC (Repast-HPC) is a next generation agent-based modeling system intended for large-scale distributed computing platforms.
- Version: 2.2.0 (compiled with gcc)
- Modules: repast-hpc/gcc/2.2.0
- Licence: Github, open-source
Usage
It implements the core Repast Simphony concepts (e.g. contexts and projections), modifying them to work in a parallel distributed environment.
Repast HPC is written in cross-platform C++.
Example
Interactive Session
Below is an example of using repast-hpc on Viper
[pysdlb@login01 ~]$ interactive
salloc: Granted job allocation 520259
Job ID 520259 connecting to c019, please wait...
[username@c019 ~]$ module add repast-hpc/gcc/2.2.0
[username@c019 ~]$ module add boost/gcc/1.53.0
[username@c019 ~]$ module add openmpi/gcc/1.10.5
[username@c019 ~]$ cd repast_hpc/bin
[username@c019 rumor]$ ./rumor_model
usage: X -config string -properties string
config string: string is the path to the repast exascale
configuration properties file
properties string: string is the path to the model properties file
Non interactive job
This runs on the scheduler SLURM
#!/bin/bash #SBATCH -J MPI-repast-hpc #SBATCH -N 4 #SBATCH --ntasks-per-node 1 #SBATCH -D /home/user/CODE_SAMPLES/Repast-HPC #SBATCH -o %N.%j.%a.out #SBATCH -e %N.%j.%a.err #SBATCH -p compute #SBATCH --exclusive echo $SLURM_JOB_NODELIST module purge module add repast-hpc/gcc/2.2.0 module add boost/gcc/1.53.0 module add openmpi/gcc/1.10.5 export I_MPI_DEBUG=5 export I_MPI_FABRICS=shm:tmi export I_MPI_FALLBACK=no mpirun -n 4 ./zombie_model1 zombie1_config.props zombie1_model.props
Further Information
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