Difference between revisions of "Applications/BayesTraits"
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===Batch Session=== | ===Batch Session=== | ||
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| + | <pre style="background-color: #E5E4E2; color: black; font-family: monospace, sans-serif;"> | ||
| + | #!/bin/bash | ||
| + | |||
| + | #SBATCH -J BayesTrait # Job Name | ||
| + | #SBATCH -N 1 # Number of Nodes to use | ||
| + | #SBATCH -n 28 # Number of CPUs | ||
| + | #SBATCH -o %N.%j.%a.out # Output file name | ||
| + | #SBATCH -e %N.%j.%a.err # Error file name | ||
| + | #SBATCH -p compute # Partition to run on | ||
| + | #SBATCH --exclusive # Instructs SLURM to not run any other job in the node(s) selected | ||
| + | |||
| + | module add bayesTraits/3.0.0 | ||
| + | srun BayesTraitsV3 /trinity/clustervision/CentOS/7/apps/bayesTraits/3.0.0/Mammal.trees bob.tress | ||
| + | |||
| + | </pre> | ||
<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | <pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | ||
Revision as of 11:31, 1 August 2017
Contents
Application Details
- Description: BayesTraits
- Version: 3.0.0 (supplied compiled binaries)
- Modules: bayes/3.0.0 (apps)
- Licence: Free (http://www.evolution.rdg.ac.uk/index.html)
Usage Examples
Interactive Session
[user@login01 ~]$ interactive salloc: Granted job allocation 409670 Job ID 409670 connecting to c128, please wait... [username@c128 ~]$ module load bayesTrait/3.0.0 [username@c128 ~]$ BayesTraitsV3 /trinity/clustervision/CentOS/7/apps/bayesTraits/3.0.0/Mammal.trees bob.tress BayesTraits V3.0 (Mar 2 2017) Mark Pagel and Andrew Meade www.evolution.reading.ac.uk
Batch Session
#!/bin/bash #SBATCH -J BayesTrait # Job Name #SBATCH -N 1 # Number of Nodes to use #SBATCH -n 28 # Number of CPUs #SBATCH -o %N.%j.%a.out # Output file name #SBATCH -e %N.%j.%a.err # Error file name #SBATCH -p compute # Partition to run on #SBATCH --exclusive # Instructs SLURM to not run any other job in the node(s) selected module add bayesTraits/3.0.0 srun BayesTraitsV3 /trinity/clustervision/CentOS/7/apps/bayesTraits/3.0.0/Mammal.trees bob.tress
[user@login01 ~]$ sbatch bayestrait-test.job Submitted batch job 409671
Further Information
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