Revision as of 11:38, 1 August 2017

Application Details

• Description: BayesTraits
• Version: 3.0.0 (supplied compiled binaries)
• Modules: bayes/3.0.0 (apps)
• Licence: Free (http://www.evolution.rdg.ac.uk/index.html)

Usage Examples

Interactive Session

[user@login01 ~]$ interactive
salloc: Granted job allocation 409670
Job ID 409670 connecting to c128, please wait...
[username@c128 ~]$ module load bayesTrait/3.0.0
[username@c128 ~]$ BayesTraitsV3 /trinity/clustervision/CentOS/7/apps/bayesTraits/3.0.0/Mammal.trees bob.tress
BayesTraits V3.0 (Mar  2 2017)
Mark Pagel and Andrew Meade
www.evolution.reading.ac.uk

Batch Session

#!/bin/bash

#SBATCH -J BayesTrait # Job Name
#SBATCH -N 1      # Number of  Nodes to use
#SBATCH  -n 28   # Number of CPUs
#SBATCH -o %N.%j.%a.out # Output file name
#SBATCH -e %N.%j.%a.err  # Error file name
#SBATCH -p compute       # Partition to run on
#SBATCH --exclusive       # Instructs SLURM to not run any other job in the node(s) selected

export I_MPI_DEBUG=5
export I_MPI_FABRICS=shm:tmi
export I_MPI_FALLBACK=no

export OMP_NUM_THREADS=28

module add bayesTraits/3.0.0
BayesTraitsV3 /trinity/clustervision/CentOS/7/apps/bayesTraits/3.0.0/Mammal.trees bob.tress

[user@login01 ~]$ sbatch bayestrait-test.job
Submitted batch job 409671

Further Information

• http://www.evolution.rdg.ac.uk/index.html

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