Applications/BayesTraits
From HPC
Contents
Application Details
- Description: BayesTraits
- Version: 3.0.0 (supplied compiled binaries)
- Modules: bayes/3.0.0 (apps)
- Licence: Free (http://www.evolution.rdg.ac.uk/index.html)
Usage Examples
Interactive Session
[user@login01 ~]$ interactive salloc: Granted job allocation 409670 Job ID 409670 connecting to c128, please wait... [username@c128 ~]$ module load bayesTrait/3.0.0 [username@c128 ~]$ BayesTraitsV3 /trinity/clustervision/CentOS/7/apps/bayesTraits/3.0.0/Mammal.trees bob.tress BayesTraits V3.0 (Mar 2 2017) Mark Pagel and Andrew Meade www.evolution.reading.ac.uk
Batch Session
#!/bin/bash #SBATCH -J BayesTrait # Job Name #SBATCH -N 1 # Number of Nodes to use #SBATCH -n 28 # Number of CPUs #SBATCH -o %N.%j.%a.out # Output file name #SBATCH -e %N.%j.%a.err # Error file name #SBATCH -p compute # Partition to run on #SBATCH --exclusive # Instructs SLURM to not run any other job in the node(s) selected export I_MPI_DEBUG=5 export I_MPI_FABRICS=shm:tmi export I_MPI_FALLBACK=no export OMP_NUM_THREADS=28 module add bayesTraits/3.0.0 BayesTraitsV3 /trinity/clustervision/CentOS/7/apps/bayesTraits/3.0.0/Mammal.trees bob.tress
[user@login01 ~]$ sbatch bayestrait-test.job Submitted batch job 409671
Further Information
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