Training/Matlab-Viper-plugin
Matlab viper plugin
Introduction
There is a feature in Matlab that enables you to submit jobs to clusters directly from your Matlab client (normal desktop Matlab). we were able to develop Matlab-Viper plugin that utilise this feature and integrate Matlab with viper to enable all our Matlab users to submit some Matlab jobs to viper easily without the need to know much about HPC or Linux. Everything could be done from the normal desktop Matlab version that many users are already using. This guide should explain more on how to use viper through the Matlab viper plugin. In-general the toolbox that could utilise such integration is the Matlab parallel computing toolbox. we will try to explain the main concepts here and point you to some Mathworks tutorial that you could use and try on viper.
- If you don't have Matlab-Viper plugin installed and tested on your Matlab contact help@hull.ac.uk or viper@hull.ac.uk and we will help you to install it and configure it.
- This is only available for Matlab 2017a , we will try to support it for all the upcoming versions starting from 2017a. if you have a special use case that requires the usage of older version you could check the possibility of creating this plugin for it by emailing us : viper@hull.ac.uk
- This link https://uk.mathworks.com/products/ineligible_programs.html shows a list of Ineligible programs that couldn't run on Matlab distributed computing server through this plugin.
Matlab to Viper
using parallel tool box, you can run your matlab code on viper using 2 modes.
- Batch job
- This is the main way to utilize the Matlab-viper-plugin. This submit your job to Viper queuing system (SLURM) and send back the results to your client once everything is done.
- This is very useful for time consuming job that need hours or even days to finish. you will submit your job and you don't need to keep your Matlab running or even the whole computer could be turned off as all your simulation will be running on Viper.
- Parallel pool
- Another mode of operation that is easier if you are testing piece of code or running a small job that you expect to finish in few minutes.
- This requires a running connection to be in place between your computer and viper. at any point you shutdown your Matlab, Wifi or even your laptop everything will be lost and you will need to rerun your code/simulation.
Further Information
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