Applications/Bridger
From HPC
Application Details
- Description: Bridger is an efficient de novo trascriptome assembler for RNA-Seq data.
- Version: r2014-12-01, r2014-12-01.1 and r2014-12-01.2
- Module: bridger/r2014-12-01, bridger/r2014-12-01.1, and bridger/r2014-12-01.2
- Licence: Github, open source
Usage Examples
Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary data produced by whole-genome shotgun sequencing.
Module
[username@login01 ~]$ module add boost/gcc/1.61.0
[username@login01 ~]$ Assemble -h
===============================================================================
Usage: Assemble [--reads/--kmers] <filename> [opts]
===============================================================================
...
[username@login01 ~]$ Bridger.pl --seqType fq --left reads.left.fq --right reads.right.fq --CPU 6