Applications/repast-hpc
From HPC
Contents
Application Details
- Description: Repast for HPC (Repast-HPC) is a next generation agent-based modeling system intended for large-scale distributed computing platforms.
- Version: 2.2.0 (compiled with gcc)
- Modules: repast-hpc/gcc/2.2.0
- Licence: Github, open-source
Usage
It implements the core Repast Simphony concepts (e.g. contexts and projections), modifying them to work in a parallel distributed environment.
Repast HPC is written in cross-platform C++.
Example
Interactive Session
Below is an example of using repast-hpc on Viper
[pysdlb@login01 ~]$ interactive
salloc: Granted job allocation 520259
Job ID 520259 connecting to c019, please wait...
[username@c019 ~]$ module add repast-hpc/gcc/2.2.0
[username@c019 ~]$ module add boost/gcc/1.53.0
[username@c019 ~]$ module add openmpi/gcc/1.10.5
[username@c019 ~]$ cd repast_hpc/bin
[username@c019 rumor]$ ./rumor_model
usage: X -config string -properties string
config string: string is the path to the repast exascale
configuration properties file
properties string: string is the path to the model properties file
Non interactive job
This runs on the scheduler SLURM
#!/bin/bash #SBATCH -J MPI-repast-hpc #SBATCH -N 4 #SBATCH --ntasks-per-node 1 #SBATCH -D /home/user/CODE_SAMPLES/Repast-HPC #SBATCH -o %N.%j.%a.out #SBATCH -e %N.%j.%a.err #SBATCH -p compute #SBATCH --exclusive echo $SLURM_JOB_NODELIST module purge module add repast-hpc/gcc/2.2.0 module add boost/gcc/1.53.0 module add openmpi/gcc/1.10.5 export I_MPI_DEBUG=5 export I_MPI_FABRICS=shm:tmi export I_MPI_FALLBACK=no mpirun -n 4 ./zombie_model1 zombie1_config.props zombie1_model.props
Further Information
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