Difference between revisions of "Applications/Bridger"
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* [https://github.com/fmaguire/Bridger_Assembler https://github.com/fmaguire/Bridger_Assembler] | * [https://github.com/fmaguire/Bridger_Assembler https://github.com/fmaguire/Bridger_Assembler] | ||
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* [[Main_Page|Home]] | * [[Main_Page|Home]] | ||
| − | * [[Applications|Application support]] | + | * [[Applications|Application support]] * |
* [[General|General]] | * [[General|General]] | ||
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* [[Programming|Programming support]] | * [[Programming|Programming support]] | ||
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Revision as of 11:15, 24 May 2019
Application Details
- Description: Bridger is an efficient de novo trascriptome assembler for RNA-Seq data.
- Version: r2014-12-01, r2014-12-01.1 and r2014-12-01.2
- Module: bridger/r2014-12-01, bridger/r2014-12-01.1, and bridger/r2014-12-01.2
- Licence: Github, open source
Usage Examples
Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary data produced by whole-genome shotgun sequencing.
Module
[username@login01 ~]$ module add boost/gcc/1.61.0
[username@login01 ~]$ Assemble -h
===============================================================================
Usage: Assemble [--reads/--kmers] <filename> [opts]
===============================================================================
...
[username@login01 ~]$ Bridger.pl --seqType fq --left reads.left.fq --right reads.right.fq --CPU 6