Difference between revisions of "Applications/Fiji"

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==Usage Examples==
 
==Usage Examples==
  
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Fiji is an open source image processing program for multidimensional image data with a focus on scientific imaging.
  
 
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It is a user interface with functions to load, display, and save images. It can be used for image processing, co-localization, deconvolution, registration, segmentation, tracking, visualization and much more. It extends the functionality of ImageJ.
 
 
 
 
 
 
 
 
  
  
 
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<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;">
[username@login01 ~]$ module load fiji/2017-03-2015
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[username@rvisu01 ~]$ module add fiji/2017-03-2015
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[username@rvisu01 ~]$ fiji
 
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</pre>
  
 
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<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;">
[username@login01 ~]$ module load fiji/imagej
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[username@rvisu01 ~]$ module add fiji/imagej
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[username@rvisu01 ~]$ fiji
 
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* [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855844/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855844/]
 
* [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855844/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855844/]
  
 
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{{Modulepagenav}}
{|
 
|style="width:5%; border-width: 0" | [[File:icon_home.png]]
 
|style="width:95%; border-width: 0" |
 
* [[Main_Page|Home]]
 
* [[Applications|Application support]]
 
* [[General|General]]
 
* [[Training|Training]]
 
* [[Programming|Programming support]]
 
|-
 
|}
 

Latest revision as of 10:44, 16 November 2022

Application Details

  • Description: Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
  • Version: ImageJ and 2017-03-15
  • Modules: fiji/2017-03-15 and fiji/imagej
  • Licence: Open source (Github)

Usage Examples

Fiji is an open source image processing program for multidimensional image data with a focus on scientific imaging.

It is a user interface with functions to load, display, and save images. It can be used for image processing, co-localization, deconvolution, registration, segmentation, tracking, visualization and much more. It extends the functionality of ImageJ.


[username@rvisu01 ~]$ module add fiji/2017-03-2015
[username@rvisu01 ~]$ fiji
[username@rvisu01 ~]$ module add fiji/imagej
[username@rvisu01 ~]$ fiji

Further Information





Modules | Main Page | Further Topics