Applications/HyPhy

From HPC
Revision as of 13:58, 1 August 2017 by Seif (talk | contribs) (Created page with "==Application Details== *Description: HyPhy (Hypothesis Testing using Phylogenies) is an open-source software package for the analysis of genetic sequences (in particular the...")

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation , search

Application Details

  • Description: HyPhy (Hypothesis Testing using Phylogenies) is an open-source software package for the analysis of genetic sequences (in particular the inference of natural selection) using techniques in phylogenetics, molecular evolution, and machine learning
  • Version: 2.2.7
  • Module: hyphy/2.2.7/gcc-6.3.0/openmpi-2.0.2
  • Licence: Open source

Usage Examples

Module

[username@login01 ~]$ module add hyphy/2.2.7/gcc-6.3.0/openmpi-2.0.2

or

[username@login01 ~]$ module add hyphy/2.2.7/gcc-6.3.0/openmpi-2.0.2

Description

There are two binaries for available.

  • HYPHYMP is openMP implementation that could utilise more than 1 processors.
  • HYPHYMPI is MPI implementation that could run on single or multiple nodes.