Difference between revisions of "Applications/Bowtie1"
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* Description: Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). | * Description: Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). | ||
* Version: 1.1.2 | * Version: 1.1.2 | ||
| − | * Modules: | + | * Modules: bowtie/1.1.2 |
* Licence: Open source (Github) | * Licence: Open source (Github) | ||
Revision as of 08:38, 6 April 2017
Application Details
- Description: Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
- Version: 1.1.2
- Modules: bowtie/1.1.2
- Licence: Open source (Github)
Usage Examples
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small
It provides the following tools:
- bowtie
- bowtie-align-l
- bowtie-align-l-debug
- bowtie-align-s
- bowtie-align-s-debug
- bowtie-build
- bowtie-buildc
- bowtie-build-l
- bowtie-build-l-debug
- bowtie-build-s
- bowtie-build-s-debug
- bowtie-inspect
- bowtie-inspect-l
- bowtie-inspect-l-debug
- bowtie-inspect-s
- bowtie-inspect-s-debug
With linkages to the following modules too:
[username@login01 ~]$ module load bowtie1/1.1.21
Further Information
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