Difference between revisions of "Applications/Bowtie1"
From HPC
m |
m |
||
| Line 52: | Line 52: | ||
* [http://bowtie-bio.sourceforge.net/tutorial.shtml http://bowtie-bio.sourceforge.net/tutorial.shtml] | * [http://bowtie-bio.sourceforge.net/tutorial.shtml http://bowtie-bio.sourceforge.net/tutorial.shtml] | ||
| + | ==Navigation== | ||
| − | |||
| − | |||
| − | |||
* [[Main_Page|Home]] | * [[Main_Page|Home]] | ||
| − | * [[Applications|Application support]] | + | * [[Applications|Application support]] * |
* [[General|General]] | * [[General|General]] | ||
| − | |||
* [[Programming|Programming support]] | * [[Programming|Programming support]] | ||
| − | |||
| − | |||
Revision as of 11:14, 24 May 2019
Application Details
- Description: Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
- Version: 1.1.2
- Modules: bowtie/1.1.2
- Licence: Open source (Github)
Usage Examples
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small
It provides the following tools:
- bowtie
- bowtie-align-l
- bowtie-align-l-debug
- bowtie-align-s
- bowtie-align-s-debug
- bowtie-build
- bowtie-buildc
- bowtie-build-l
- bowtie-build-l-debug
- bowtie-build-s
- bowtie-build-s-debug
- bowtie-inspect
- bowtie-inspect-l
- bowtie-inspect-l-debug
- bowtie-inspect-s
- bowtie-inspect-s-debug
With linkages to the following modules too:
[username@login01 ~]$ module add bowtie1/1.1.21