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| ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. | | ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. | ||
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| + | |[[applications/Perl|Perl]] | ||
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| [[applications/SAS|SAS]] | | [[applications/SAS|SAS]] | ||
Revision as of 10:42, 15 March 2017
Contents
Welcome to Viper Wiki
This area provides technical support to the users of Viper.
Application Support
Click on the links below for support on the individual packages below:
| Package | Description |
| Ansys | ANSYS Fluent software includes broad physical modelling capabilities to model flow, turbulence, heat transfer, and reactions for industrial applications. |
| Avizo | Avizo data visualisation and analysis tool |
| Autotools | GNU Autotools, a suite of programming tools designed to assist in making source code packages |
| COMSOL | COMSOL Multiphysics is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems |
| CP2K | CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems. |
| FDS-SMV | Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. Smokeview (SMV) is a visualization program used to display the output of FDS and CFAST simulations. |
| GCC | GCC (GNU Compiler Collection) is a collection of compilers consisting of C, C++, Fortran and more. |
| GNUplot | Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. |
| LS-DYNA | General-purpose finite element program capable of simulating complex real world problems. |
| Matlab | Numerical Computing Environment. |
| MrBayes | MrBayes: Bayesian Inference of Phylogeny |
| Nwchem | NWChem provides computational chemistry tools and particularly large scientific computational chemistry problems. |
| Orca | ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. |
| Perl | |
| SAS | Statistical Analysis System. |
| Star-ccm+ | Computational Fluid Package. |
| Stata | Stata is a commercial statistical package, which provides a complete solution for data analysis, data management, and graphics. |
| Utilities | General utilities module including zip, wget and git utilities. |
General Support
Click on the links below for general support:
| Topic | Description |
| What is Viper | What is Viper? |
| Batch Jobs | Viper batch jobs guide |
| Interactive Sessions | Viper Interactive session guide |
| Modules | Application module guide |
| Slurm | Slurm how-to |
| Visualisation Nodes | Guide to using Viper's visualisation nodes |
Training
| Training Area | Description |
| Getting Connected | Learn how to connect to Viper |
| Transferring Data | Learn how to download and upload data. |
| Working Remotely on Viper | Learn how to remotely connect to Viper. |
| Linux command line | Learn the Linux command line with this extensive guide. |
| Linux vi editor | Learn the Linux editor vi for editing files |
| Linux nano editor | Learn the Linux editor nano for editing files |
| Data Backup | Data backup for user accounts |
Programming Support
Click on the links below for support on programming packages:
| Package | Description |
| C | C is a general-purpose, high-level language that was originally developed by Dennis M. Ritchie to develop the UNIX operating system at Bell Labs. |
| C++ | C++ is a general-purpose programming language. It has imperative, object-oriented and generic programming features, while also providing facilities for low-level memory manipulation. |
| C-Sharp | C# is a multi-paradigm programming language encompassing strong typing, imperative, declarative, functional, generic, object-oriented (class-based), and component-oriented programming. Originally created by Microsoft. |
| CUDA | CUDA is a parallel computing platform and application programming interface (API) model created by Nvidia. |
| Fortran | Fortran is a general-purpose, imperative programming language that is especially suited to numeric computation and scientific computing. |
| JAVA | Java is a high-level programming language originally developed by Sun Microsystems and released in 1995. |
| OpenMP | OpenMP is an implementation of multithreading, a method of parallelizing whereby a master thread (a series of instructions executed consecutively) forks a specified number of slave threads and the system divides a task among them. |
| OpenMPI | MPI stands for the Message Passing Interface. MPI is a standardized API typically used for parallel and/or distributed computing. |
| Perl | Perl is an interpreted language useful for rapid code development and multi-purpose programming. |
| Python | Python is an interpreted language useful for rapid code development and distributed computing. |
| R | R is a programming language and software environment for statistical analysis, graphics representation and reporting. |