Difference between revisions of "Applications/Fiji"
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| + | Fiji is an open source image processing program for multidimensional image data with a focus on scientific imaging. | ||
| − | + | It is a user interface with functions to load, display, and save images. It can be used for image processing, co-localization, deconvolution, registration, segmentation, tracking, visualization and much more. It extends the functionality of ImageJ. | |
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<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | <pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | ||
[username@login01 ~]$ module load fiji/2017-03-2015 | [username@login01 ~]$ module load fiji/2017-03-2015 | ||
| + | [username@login01 ~]$ fiji | ||
</pre> | </pre> | ||
<pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | <pre style="background-color: black; color: white; border: 2px solid black; font-family: monospace, sans-serif;"> | ||
[username@login01 ~]$ module load fiji/imagej | [username@login01 ~]$ module load fiji/imagej | ||
| + | [username@login01 ~]$ fiji | ||
</pre> | </pre> | ||
Revision as of 15:13, 12 April 2017
Application Details
- Description: Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
- Version: ImageJ and 2017-03-15
- Modules: fiji/2017-03-15 and fiji/imagej
- Licence: Open source (Github)
Usage Examples
Fiji is an open source image processing program for multidimensional image data with a focus on scientific imaging.
It is a user interface with functions to load, display, and save images. It can be used for image processing, co-localization, deconvolution, registration, segmentation, tracking, visualization and much more. It extends the functionality of ImageJ.
[username@login01 ~]$ module load fiji/2017-03-2015 [username@login01 ~]$ fiji
[username@login01 ~]$ module load fiji/imagej [username@login01 ~]$ fiji
Further Information
- https://imagej.net/Fiji
- https://imagej.net/Getting_Started
- http://search.imagej.net/
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855844/
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