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Revision as of 17:14, 15 March 2017

Welcome to Viper Wiki

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This area provides technical support to the users of Viper.

Application Support

Click on the links below for support on the individual packages below:

Package Description
Ansys ANSYS Fluent software includes broad physical modelling capabilities to model flow, turbulence, heat transfer, and reactions for industrial applications.
Avizo Avizo data visualisation and analysis tool
Autotools GNU Autotools, a suite of programming tools designed to assist in making source code packages
COMSOL COMSOL Multiphysics is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems
CP2K CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems.
Delft3D Delft3D is a world leading 3D modeling suite to investigate hydrodynamics, sediment transport and morphology and water quality for fluvial, estuarine and coastal environments.
FDS-SMV Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. Smokeview (SMV) is a visualization program used to display the output of FDS and CFAST simulations.
GCC GCC (GNU Compiler Collection) is a collection of compilers consisting of C, C++, Fortran and more.
GNUplot Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms.
IDL IDL, short for Interactive Data Language, is a programming language used for data analysis. It is popular in particular areas of science, such as astronomy, atmospheric physics and medical imaging.
LS-DYNA General-purpose finite element program capable of simulating complex real world problems.
Matlab Numerical Computing Environment.
MrBayes MrBayes: Bayesian Inference of Phylogeny
Nwchem NWChem provides computational chemistry tools and particularly large scientific computational chemistry problems.
Orca ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules.
Perl Perl is a family of high-level, general-purpose, interpreted, dynamic programming languages.
SAS Statistical Analysis System.
Star-ccm+ Computational Fluid Package.
Stata Stata is a commercial statistical package, which provides a complete solution for data analysis, data management, and graphics.
Utilities General utilities module including zip, wget and git utilities.

General Support

Click on the links below for general support:

Topic Description
What is Viper What is Viper?
Batch Jobs Viper batch jobs guide
Interactive Sessions Viper Interactive session guide
Modules Application module guide
Slurm Slurm how-to
Visualisation Nodes Guide to using Viper's visualisation nodes
Data Backup Data backup for user accounts

Training

Training Area Description
Getting Connected Learn how to connect to Viper
Transferring Data Learn how to download and upload data.
Working Remotely on Viper Learn how to remotely connect to Viper.
Linux command line Learn the Linux command line with this extensive guide.
Linux vi editor Learn the Linux editor vi for editing files
Linux nano editor Learn the Linux editor nano for editing files

Programming Support

Click on the links below for support on programming packages:

Package Description
C C is a general-purpose, high-level language that was originally developed by Dennis M. Ritchie to develop the UNIX operating system at Bell Labs.
C++ C++ is a general-purpose programming language. It has imperative, object-oriented and generic programming features, while also providing facilities for low-level memory manipulation.
C-Sharp C# is a multi-paradigm programming language encompassing strong typing, imperative, declarative, functional, generic, object-oriented (class-based), and component-oriented programming. Originally created by Microsoft.
CUDA CUDA is a parallel computing platform and application programming interface (API) model created by Nvidia.
Fortran Fortran is a general-purpose, imperative programming language that is especially suited to numeric computation and scientific computing.
JAVA Java is a high-level programming language originally developed by Sun Microsystems and released in 1995.
OpenMP OpenMP is an implementation of multithreading, a method of parallelizing whereby a master thread (a series of instructions executed consecutively) forks a specified number of slave threads and the system divides a task among them.
OpenMPI MPI stands for the Message Passing Interface. MPI is a standardized API typically used for parallel and/or distributed computing.
Perl Perl is an interpreted language useful for rapid code development and multi-purpose programming.
Python Python is an interpreted language useful for rapid code development and distributed computing.
R R is a programming language and software environment for statistical analysis, graphics representation and reporting.