Applications/Minimap2

Application Details

• Description: Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database.
• Version: 2.15
• Modules: minimap2/2.15
• Citing: If you use minimap2 in your work, please cite: Li, H. (2018). Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics. doi:10.1093/bioinformatics/bty191

Usage Examples

Usage information can be found at https://github.com/lh3/minimap2

[username@login01 ~]$ module add minimap2/2.15

Batch Job

#!/bin/bash
#SBATCH -J minimap2job
#SBATCH -p compute
#SBATCH -n 4
#SBATCH -o %N.%j.out
#SBATCH -e %N.%j.err

module purge
module load minimap2/2.15

minimap2 -ax map10k $MINIMAP2_HOME/test/MT-human.fa $MINIMAP2_HOME/test/MT-orang.fa > test.sam

Further Information

• https://github.com/lh3/minimap2

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