Difference between revisions of "Applications"

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|  [[applications/Utilities|Utilities]]
 
|  [[applications/Utilities|Utilities]]
 
|  General utilities module including zip, wget and git utilities.
 
|  General utilities module including zip, wget and git utilities.
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|  [[applications/Yt|Yt]]
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|  yt supports structured, variable-resolution meshes, unstructured meshes, and discrete or sampled data such as particles. Focused on driving physically-meaningful inquiry, yt has been applied in domains such as astrophysics, seismology, nuclear engineering, molecular dynamics, and oceanography.
 
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|  [[applications/test-modules|Test-Modules]]
 
|  [[applications/test-modules|Test-Modules]]
 
|  Access to modules currently in development
 
|  Access to modules currently in development
 
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Revision as of 15:00, 4 April 2017

Application Support

Click on the links below for support on the individual packages below:

Package Description
ABySS Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler.
Ansys ANSYS Fluent software includes broad physical modelling capabilities to model flow, turbulence, heat transfer, and reactions for industrial applications.
Avizo Avizo data visualisation and analysis tool
Boost C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications.
CMake CMake is cross-platform free and open-source software for managing the build process of software using a compiler-independent method.
COMSOL COMSOL Multiphysics is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems
CP2K CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems.
CUDA CUDA is NVIDIA’s parallel computing architecture that enables dramatic increases in computing performance by harnessing the power of the GPU nodes.
Delft3D Delft3D is a world leading 3D modeling suite to investigate hydrodynamics, sediment transport and morphology and water quality for fluvial, estuarine and coastal environments.
FDS-SMV Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. Smokeview (SMV) is a visualization program used to display the output of FDS and CFAST simulations.
Ffmpeg ffmpeg is a very fast video and audio converter that can also grab from a live audio/video source.
Flex Flex (Fast lexical analyser), Flex is a tool for generating scanners: programs which recognize lexical patterns in text.
GCC GCC (GNU Compiler Collection) is a collection of compilers consisting of C, C++, Fortran and more.
GNUplot Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms.
IDL IDL, short for Interactive Data Language, is a programming language used for data analysis. It is popular in particular areas of science, such as astronomy, atmospheric physics and medical imaging.
Libgd The module LibGD is an open source code library for the dynamic creation of images.
Libjpeg-turbo The module Libjpeg-turbo is a JPEG image codec that uses SIMD instructions (MMX, SSE2, AVX2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression
Libpng The reference library for use in applications that read, create, and manipulate PNG (Portable Network Graphics) raster image files.
LS-DYNA General-purpose finite element program capable of simulating complex real world problems.
Matlab Numerical Computing Environment.
Mono .NET Framework-compatible set of tools including, among others, a C# compiler and a Common Language Runtime.
MrBayes MrBayes: Bayesian Inference of Phylogeny
Ncurses ncurses (new curses) is a programming library providing an application programming interface (API) that allows the programmer to write text-based user interfaces in a terminal-independent manner.
NgSpice Ngspice is a mixed-level/mixed-signal circuit simulator. Its code is based on three open source software packages: Spice3f5, Cider1b1 and Xspice.
Nwchem NWChem provides computational chemistry tools and particularly large scientific computational chemistry problems.
Obitools The OBITools package is a set of programs specifically designed for analysing NGS data in a DNA meta-barcoding context, taking into account taxonomic information.
Openfoam OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to acoustics, solid mechanics and electromagnetics.
OpenMPI Open MPI is a Message Passing Interface (MPI) library used for communicating between HPC nodes.
Orca ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules.
Paraview ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques.
Petsc PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modelled by partial differential equations. It supports MPI, and GPUs through CUDA or OpenCL, as well as hybrid MPI-GPU parallelism.
Perl Perl is a family of high-level, general-purpose, interpreted, dynamic programming languages.
Readline GNU Readline is a software library that provides line-editing and history capabilities for interactive programs with a command-line interface, such as Bash.
Samtools Tools (written in C using htslib) for manipulating next-generation sequencing data
SAS Statistical Analysis System.
SSW Integrated software libraries, data bases, and system utilities which provide a common programming and data analysis environment for Solar Physics
Star-ccm+ Computational Fluid Package.
Stata Stata is a commercial statistical package, which provides a complete solution for data analysis, data management, and graphics.
Utilities General utilities module including zip, wget and git utilities.
Yt yt supports structured, variable-resolution meshes, unstructured meshes, and discrete or sampled data such as particles. Focused on driving physically-meaningful inquiry, yt has been applied in domains such as astrophysics, seismology, nuclear engineering, molecular dynamics, and oceanography.
Test-Modules Access to modules currently in development